Talking in all seriousness, the additional substances they put in cigarettes are considered to be a factor that is believed to cause cancer. I would think that smoking pipe would cause less detrimental effects (which I concluded from my knowledge that pipe smokers do not put additional tar or nicotine into the leaves they are smoking).
On another note, The Lord of the Rings was published in the 1950's, while the belief that smoking
cigarettes was harmful only became known in the 1960's.
The direct linkage of smoking and cancer has not been proven. They [scientists] had concluded such notion from trend they see on the graphs and the prevalence of lung cancer in smoking patients. It was not scientifically proven. If I were a writer who lived in the 1950's, I would not want a non-scientifically proven theory to be put into my novel.
[Oh, Merry Christmas and/or Happy Holidays to you all

]